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[user@localhost mirdeep2-master]$ source ~/.bash_profile
[user@localhost mirdeep2-master]$ perl install.pl
###############################################################################################
# Last update: Dec 03, 2017
# This is the miRDeep2 installer
# It is tested under a bash and zsh shell
# It will try to download all necessary third-party tools and install them.
# To run this installer you need to have mirdeep2.0.0.8 or later
#
###############################################################################################
gcc version: 8.2.1 already installed, nothing to do ...
Checking environment variables ...
--2019-01-09 19:18:36-- https://sourceforge.net/projects/bowtie-bio/files/bowtie/
Resolving sourceforge.net (sourceforge.net)... 216.105.38.13
Connecting to sourceforge.net (sourceforge.net)|216.105.38.13|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 231279 (226K) [text/html]
Saving to: ‘to_del’
to_del 100%[================>] 225.86K 361KB/s in 0.6s
2019-01-09 19:18:38 (361 KB/s) - ‘to_del’ saved [231279/231279]
Downloading bowtie 1.1.1 binaries
--2019-01-09 19:18:38-- http://netcologne.dl.sourceforge.net/project/bowtie-bio/bowtie/1.1.1/bowtie-1.1.1-linux-x86_64.zip
Resolving netcologne.dl.sourceforge.net (netcologne.dl.sourceforge.net)... 2001:4dd0:1234:6::5f, 78.35.24.46
Connecting to netcologne.dl.sourceforge.net (netcologne.dl.sourceforge.net)|2001:4dd0:1234:6::5f|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 14196825 (14M) [application/octet-stream]
Saving to: ‘bowtie-1.1.1-linux-x86_64.zip’
bowtie-1.1.1-linux- 100%[================>] 13.54M 23.3MB/s in 0.6s
2019-01-09 19:18:39 (23.3 MB/s) - ‘bowtie-1.1.1-linux-x86_64.zip’ saved [14196825/14196825]
Installing bowtie binaries
Building of /home/user/Downloads/mirdeep2-master/essentials/bowtie-1.1.1/bowtie successful
Downloading Vienna package now
--2019-01-09 19:18:40-- https://www.tbi.univie.ac.at/RNA/download/sourcecode/1_8_x/ViennaRNA-1.8.4.tar.gz
Resolving www.tbi.univie.ac.at (www.tbi.univie.ac.at)... 131.130.44.61
Connecting to www.tbi.univie.ac.at (www.tbi.univie.ac.at)|131.130.44.61|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 1397733 (1.3M) [application/x-gzip]
Saving to: ‘ViennaRNA-1.8.4.tar.gz’
ViennaRNA-1.8.4.tar 100%[================>] 1.33M 3.94MB/s in 0.3s
2019-01-09 19:18:41 (3.94 MB/s) - ‘ViennaRNA-1.8.4.tar.gz’ saved [1397733/1397733]
Installing Vienna package now
configure: error: in `/home/user/Downloads/mirdeep2-master/essentials/ViennaRNA-1.8.4/RNAforester':
configure: error: C++ compiler cannot create executables
See `config.log' for more details.
configure: error: ./configure failed for RNAforester
Building of /home/user/Downloads/mirdeep2-master/essentials/ViennaRNA-1.8.4/install_dir/bin/RNAfold successful
Downloading SQUID library now
--2019-01-09 19:19:05-- http://eddylab.org/software/squid/squid.tar.gz
Resolving eddylab.org (eddylab.org)... 2600:3c03::f03c:91ff:fec8:383c, 96.126.110.11
Connecting to eddylab.org (eddylab.org)|2600:3c03::f03c:91ff:fec8:383c|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 301432 (294K) [application/x-gzip]
Saving to: ‘squid.tar.gz’
squid.tar.gz 100%[================>] 294.37K 773KB/s in 0.4s
2019-01-09 19:19:06 (773 KB/s) - ‘squid.tar.gz’ saved [301432/301432]
Extracting squid and configuring it now
^C
[user@localhost mirdeep2-master]$ ls^C
[user@localhost mirdeep2-master]$